Growing up in a "non-denominational", independent fundamental Baptist house I was always taught that Catholics weren't Christians because they worship idols. Now that I've left the faith I would easily classify them as being Christian.
While I think many people actually do classify them as Christians they do have some significant differences in their beliefs and practices than most Protestant denominations; and being themselves the largest Christian denomination by far it can be useful in some analysis to treat them as a distinct entity (the answer to "percentage of global population that subscribe to a particular religion" is much more interesting when broken into "Christian Catholic: %" and "Christian Other: %").