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Other episodes did, and I hope we'll see more of that. Specifically, it's about Illyrian culture: Genetic modification is deeply ingrained, required in their ethics: "We don't terraform planets, that's disrespectful of nature, we transform ourselves", as heard previous season (I'm sure someone will fill in the episode number). As such the practice doesn't root in a desire for dominance or superiority, but gentleness towards the universe.
That is, the issue with the eugenics wars wasn't genetic manipulation itself, but that humanity was war-like and out for dominance and superiority. The augments' attitude of supremacy simply reflect cultural attitudes back then, they were not caused by genetic modifications, but enabled. (Alternatively: The bad idea of imbuing augments with such a sense was due to bonkers scientists influenced by cultural attitudes).
Or maybe more like entheogens: Drugs that kill one society are used responsibly and for benefit by others because they have cultural practices regulating them, rites (regulations) saying when and where and why they should be used.
If the federation ever gets around to legalising genetic manipulation having regulations written by Illyrians and Denobulans sounds like a very good idea.
What I can't get out of my head this morning is actually Bashir's plotline with his parents on DS9, because it captures what's so insidious about even "benevolent" genetic modification. He's not angry at them just because they broke the law, he's angry at them because they decided they didn't like who he was and chose to transform him into someone else, someone he feels is a different person. And this is actually the fundamental argument against a social program of gene management in real life; it allows society to police what types of bodies and what types of minds are "normal" and flattens species diversity and experience diversity in favor of whatever the norms say is "better". The danger isn't just the risk of Khan like supermen, its a moral argument against determining how people's bodies and minds are going to develop before they can even consent, even before they're born.
As strongly as I feel about this, I do think you could create a case for why what the Ilyrians do is meaningfully different, the "adapting to other planets rather than making them adapt to us" idea is interesting and complicated, but it felt extremely cursory in this ep